Diogo Borges Lima


Curriculum Vitae

Brazilian Lattes CV
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Experience

Honor & Awards

  • Honorable mention in the "Prêmio Capes de Tese 2016" award as one of the top 3 PhD thesis in biological sciences in Brazil, October 2017
  • One of the best projects presented in the academic journey - ICC/Fiocruz - 2014 & 2015
  • The best poster in the Masters category - BrProt (Conference) - 2012

Reviewer Editor of Frontiers in Chemistry - Chemical Biology journal.

Reviewer of the following journals

  • Bioinformatics
  • Scientific Reports - Nature
  • Journal of Proteomics
  • Biochimica et Biophysica Acta - Proteins and Proteomics
  • Letters in Drug Design & Discovery
  • International Society for Computational Biology - ECCB
  • Source Code for Biology and Medicine - BMC

Co-supervisor of MSc and PhD students

  • Julia Ruta, PhD in Bioinformatics at Leibniz-FMP - Germany (2022 - on going)
  • Louise Ulrich Kurt, PhD in Biosciences and Biotechnology at ICC/Fiocruz - Brazil (2020 - on going)
  • Milan Avila Clasen, PhD in Biosciences and Biotechnology at ICC/Fiocruz - Brazil (concluded in 2023)
  • Louise Ulrich Kurt, MSc in Biosciences and Biotechnology at ICC/Fiocruz - Brazil (concluded in 2020)
  • Milan Avila Clasen, MSc in Biosciences and Biotechnology at ICC/Fiocruz - Brazil (concluded in 2019)

Supervisor of undergraduate students (BSc)

Invited lectures / seminars in computational proteomics

  • XII Proteomics Workshop. (virtual). Campinas - SP, Brazil. October 30th to November 1st, 2023.
  • International course on Proteome Analysis by Mass Spectrometry – Institut Pasteur de Montevideo – Uruguay. March 21st to 30th, 2022. (Total: 54h)
  • Top-down Proteomics course at the 7th Brazilian Conference on Mass Spectrometry – Rio de Janeiro, Brazil. December 7th, 2018 (Total: 9h)
  • International course on Proteome Analysis by Mass Spectrometry – Institut Pasteur de Montevideo – Uruguay. October 15th to 23rd, 2018. (Total: 54h)
  • Séminaire – Journées Departamentales – DBSC: “Automatic Selection of discriminative top-down mass spectra with DiagnoTop” – Institut Pasteur, Paris – France. December 12th and 13th, 2017.
  • Séminaire DBSC: “How to identify and annotate cross-linked peptides analyzed by mass spectrometry?” – Institut Pasteur, Paris – France. February 14th, 2017.
  • International course on Proteome Analysis by Mass Spectrometry – Institut Pasteur de Montevideo – Uruguay. November 28th to December 2nd, 2016. (Total: 35h)
  • VII Proteomics Workshop. Campinas – SP, Brazil. November 10th and 11th, 2016. (Total: 15h)
  • VI BrMass & 1st IbMS, course: Proteomics. Rio de Janeiro – Brazil. December 9th, 2016. (Total: 8h)

Events organization

  • Symposium in Proteomics at Fiocruz. Rio de Janeiro, RJ - Brazil. November 7th, 2014 (Symposium)
  • 1st Symposium Carlos Chagas Institute in Proteomics. Curitiba, PR - Brazil. July 5th, 2013 (Symposium)

Participation in events

2023

  • 71st American Society for Mass Spectrometry. Houston, USA. June 4th to 8th - 71st ASMS (Conference).

2012-2022

  • Berlin PostDoc day 2022. Berlin, Germany. November 3rd, 2022 - PostDoc Day 2022 (Symposium).
  • 70th American Society for Mass Spectrometry. Minneapolis, USA. June 5th to 9th, 2022 - 70th ASMS (Conference).
  • Proteome Analysis by Mass Spectrometry. Montevideo, Uruguay. March 21st to 30th, 2022 - International Course - IP Montevideo (Course).
  • X Proteomics Workshop. (virtual). November 3rd to 5th, 2021 - Workshop LNBio (Symposium).
  • Berlin PostDoc day 2021. Berlin, Germany. November 4th, 2021 - PostDoc Day 2021 (Symposium).
  • Berlin PostDoc day 2020. Berlin, Germany. November 13th, 2020 - PostDoc Day 2020 (Symposium).
  • 1st European Top-down Proteomics Symposium. Paris, France. February 12th to 14th, 2019 - 1st EuTDP (Symposium).
  • 7th BrMass. Rio de Janeiro, RJ. December 8th to 12th, 2018 - 7th BrMass (Conference).
  • Proteome Analysis by Mass Spectrometry. Montevideo, Uruguay. October 15th to 23rd, 2018 - International Course - IP Montevideo (Course).
  • 66th American Society for Mass Spectrometry. San Diego, USA. June 3rd to 7th, 2018 - 66th ASMS (Conference)
  • Departmental Days of the Department of Structural Biology and Chemistry - Institut Pasteur. Paris, France. December 12th and 13th, 2017 (Departamental Journey).
  • São Paulo School of Advanced Science on Mass Spectrometry - based Proteomics - SPSAS-MS. Campinas, Brazil. August 28th to September 6th, 2017 - SPSAS-MS (Workshop)
  • 65th American Society for Mass Spectrometry. Indianapolis, USA. June 4th to 8th, 2017 - 65th ASMS (Conference)
  • VI BrMass & 1st IbMS. Rio de Janeiro, RJ. December 10th to 14th - 6th, 2016 - BrMass (Conference).
  • Proteome Analysis by Mass Spectrometry. Montevideo, Uruguay. November 28th to December 2nd, 2016 - International Course - IP Montevideo (Course).
  • VII Proteomics Workshop. Campinas, SP. November 8th to 11th, 2016 - Workshop LNBio (Symposium).
  • 2nd Proteomics meeting of the Brazilian Proteomics Society. Buzios, RJ. December 7th to 10th - 2nd, 2014 - BrProt (Conference)
  • V BrMass. Campinas, SP. December 7th to 11th - 5th, 2013 - BrMass (Conference).
  • IV Proteomics Workshop. Campinas, SP. November 6th and 7th, 2013 - Workshop LNBio (Symposium).
  • Advanced topics in Proteomics. Rio de Janeiro, RJ. From October, 29th to November 1st, 2013 (Symposium).
  • 1st Symposium Carlos Chagas Institute in Proteomics. Curitiba, PR. July 5th, 2013 (Symposium)
  • São Paulo Advanced School on Bioorganic Chemistry. Araraquara, SP. July 1st to 5th, 2013 - ESPCA (Conference)
  • Implementation and Perspectives of MS-Imaging in Rio de Janeiro, RJ. June 6th and 7th, 2013 - MSI 2013 - Rio (Symposium)
  • 1st National Meeting of Brazilian Proteomics Society. Rio de Janeiro, RJ. December 10th, 11th and 12th, 2012 - BrProt (Conference)
  • V Proteomics Forum of Rio de Janeiro. November 29th and 30th, 2012 (Conference)
  • III Proteomics Workshop. Campinas, SP. November 8th, 2012 - Workshop LNBio (Symposium).

Professional Experience

  • System development at Provisions Department of Brazil Navy (DAbM), SOMAR Project (SINGRA). (2009-2011)
  • System development at Federal Service of Data Processing (SERPRO), SICONV Project. (10/2008-2009)
  • System development at Cataloging Center of the Armed Force of Brazil Navy (CECAFA), I18N Project. (04/2008 ~ 10/2008)

Skills

  • Operating Systems: Linux, MacOS and Windows
  • Programming language: C, C#, C++, Java, Python, R, SQL, HTML, Javascript, XML
  • Databases: MySQL, SQLite, Oracle