Education

Ph.D. in Bioinformatics and Computational Biology - Carlos Chagas Institute - Fundação Oswaldo Cruz (Fiocruz), Curitiba - Brazil. (2013-2016) "Algorithm for identifying cross-linked peptides analyzed by mass spectrometry." (PDF in portuguese)
Supervised by Dr. Paulo C. Carvalho and Dr. Fabio Cesar Gozzo.
I've developed with my supervisors, as Ph.D Thesis, a new search engine for identifying and annotating cross-linked peptides, called SIM-XL.
Visualize our video demonstration to check how SIM-XL works!
M.Sc. in Computer Science and Systems Engineering - COPPE - Federal University of Rio de Janeiro - UFRJ, Rio de Janeiro - Brazil. (2011-2013) "Computational Method for identifying peptides labeled with phenylisothiocyanate analyzed by liquid chromatography coupled to tandem mass spectrometry" (PDF in portuguese) Supervised by Dr. Paulo C. Carvalho and Dr. Felipe M. G. França.
I have developed with Dr. Paulo C. Carvalho as Master's Thesis, a search tool mass spectrometry - SIM (Spectrum Identification Machine), using PSM approach.
B.Sc. in Computer Science at the DCC - Federal University of Rio de Janeiro - UFRJ, Rio de Janeiro - Brazil. (2006-2010) "Redução do Acoplamento com Frameworks Específicos de Plataforma no MDArte: Estudo de Caso em Ambientes Móveis" (PDF in portuguese)

Diogo Borges Lima